The Bionemo Database combines metabolic, genetic and regulatory information. The central entities of the database are the enzymatic complexes. These enzymatic complexes are linked to the biochemical reactions they perform defined as the transformation of substrates into products. Reactions associate into pathways. Enzymatic complexes are composed of protein subunits that are encoded by genes. Genes are associated into transcription units that contain a single promoter. These transcription units are regulated by one or more regulatory complexes, comprising a transcription factor, one or more DNA binding sites and generally an inducer compound.

Bionemo current version is 6.0. This is the first public release of the database. When a future version is released, changes will be described here.